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snoRNA - Conservation


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Conservation

Arabidopsis rRNA modification sites and conservation with human and yeast

SnoRNA Predicted Sites Mapped Sites Human SnoRNA Human Sites Yeast SnoRNA Yeast Sites Conservation of Sites
18SAtU14Cm416.U14Cm462U14Cm414PHY
18SAtU16Am4381,2U16Am484--PH
18SAtU27Am28.U27Am27SnR74Am28PHY
18SAtU36Am621.U36aAm668SnR47Am619PHY
18SAtU43Cm1641.U43Cm1705SnR70Cm1638PHY
18SAtU54Gm597.U54Gm644--PH
18SAtU56Cm4712U56Cm517--PH
18SAtU61Um1381.U61Um1442--PH
18SAtsnoR100111.Nd110..PH
18SAtsnoR11Am1662.----P
18SAtsnoR13Um613.----P
18SAtsnoR14Um1232.NdUm1288--PH
18SAtsnoR15Am4381,2U16Am484--PH
18SAtsnoR17Am4662NdAm512--PH
18SAtsnoR18Am162.U44Am166--PH
18SAtsnoR19Gm1431.U25Gm1490SnR56Gm1427PHY
18SAtsnoR19Um14451----P
18SAtsnoR20.1Um10101,3----P
18SAtsnoR20.2Cm10113----P
18SAtsnoR21Gm12722U32Gm1328SnR40Gm1269PHY
18SAtsnoR23Am17541NdAm1850NdAm1779PHY
18SAtsnoR25Cm795.----P
18SAtsnoR30Gm3901,2NdGm436--PH
18SAtsnoR32Am1327.NdAm1383--PH
18SAtsnoR32Um12633----P
18SAtsnoR34Um12702U33Um1326SnR55Um1267PHY
18SAtsnoR35Um1104.----P
18SAtsnoR38Um1158.----P
18SAtsnoR39Gm668.----P
18SAtsnoR41YAm5431NdAm590SnR41Am541PHY
18SAtsnoR42Um305.---.P
18SAtsnoR43Am5431NdAm590SnR41Am541PHY
18SAtsnoR46Cm1174.----P
18SAtsnoR48Gm1596.----P
18SAtsnoR51000.Nd1056SnR31998PHY
18SAtsnoR51118.----P
18SAtsnoR53YAm7992--SnR53Am796PY
18SAtsnoR54Am1558.----P
18SAtsnoR58Gm3911NdGm436--PH
18SAtsnoR59Am9752U59Am1031SnR54Am975PHY
18SAtsnoR64Am1527.----P
18SAtsnoR66Cm38.----P
18SAtsnoR67Um1261.----P
18SAtsnoR69Gm1415.---.P
18SAtsnoR721000.Nd1056SnR31998PHY
18SAtsnoR721118.----P
18SAtsnoR731520.----P
18SAtsnoR73634.Nd681--PH
18SAtsnoR76918.....P
18SAtsnoR77752.---.P
18SAtsnoR77YUm580.NdUm627SnR77Um578PHY
18SAtsnoR781523.----P
18SAtsnoR8Am1575.----P
18SAtsnoR8Um1261.----P
18SAtsnoR84827.....P
18SAtsnoR86360.---.P
18SAtsnoR87715.---.P
18SAtsnoR881302.----P
18SAtsnoR89220.---.P
18SAtsnoR90948.Nd1004..PH
18SAtsnoR911090.....P
18SAtsnoR91604.---.P
18SAtsnoR91761.Nd815--PH
18SAtsnoR99803.....P
18SU33Um12702U33Um1326SnR55Um1267PHY
25SAtU15Am22711,2U15Am3764SnR13Am2279PHY
25SAtU15Gm22782--SnR75Gm2286PY
25SAtU18Am660.U18Am1313U18Am647PHY
25SAtU192250.Nd3743..PH
25SAtU24Am14512U76Am2350U24Am1447PHY
25SAtU24Cm14392U24Cm2338U24Cm1435PHY
25SAtU29Am2936.U29Am4493SnR71Am2943PHY
25SAtU30Am23112U30Am3804--PH
25SAtU31Gm26102U31Gm4166SnR67Gm2616PHY
25SAtU34Um18821,2U34Um2824SnR62Um1886PHY
25SAtU35Cm29492U35Cm4506SnR73Cm2956PHY
25SAtU36aAm22102U36Am3703SnR47Am2218PHY
25SAtU36aGm2226.----P
25SAtU37Am22042U37Am3697--PH
25SAtU38Am1140.U38abAm1858SnR61Am1131PHY
25SAtU49Cm15102U49Cm2409--PH
25SAtU49Cm28691,2U49Cm4426--PH
25SAtU51Am8142U51/U32aAm1511SnR39/59Am805PHY
25SAtU53Cm23551U53Am3848--PH
25SAtU55Cm18502U55 / U39Cm2791--PH
25SAtU652816.U654373SnR342823PHY
25SAtU652870.U654427SnR342877PHY
25SAtU80Am824.U80/U77Am1521SnR60Am815PHY
25SAtU80Um915.U80Gm1612SnR60Gm906PHY
25SAtsnoR1Gm27811,2,4--SnR48Gm2788PY
25SAtsnoR10Um26412NdUm4197--PH
25SAtsnoR12Am21163,4----P
25SAtsnoR13Um3289.----P
25SAtsnoR15Cm18502U55 / U39Cm2791--PH
25SAtsnoR16Um48.----P
25SAtsnoR16.1Um2445.----P
25SAtsnoR16.2Um36.----P
25SAtsnoR18Am2924.----P
25SAtsnoR22Am12601----P
25SAtsnoR22Um12751----P
25SAtsnoR24Cm24041,2----P
25SAtsnoR24Cm2826.----P
25SAtsnoR29Gm2381.----P
25SAtsnoR31Am2901.----P
25SAtsnoR33Am18612NdAm2802--PH
25SAtsnoR34Gm2907.NdGm4464--PH
25SAtsnoR35Gm26102U31Gm4166SnR67Gm2616PHY
25SAtsnoR36Um1218.----P
25SAtsnoR36Um145.----P
25SAtsnoR37Cm23551U53Am3848--PH
25SAtsnoR37Um2411.U52Um3904SnR78Um2414PHY
25SAtsnoR38YGm2805.--SnR38Gm2812PY
25SAtsnoR39BYGm8121,2NdGm1509SnR39BGm803PHY
25SAtsnoR40Um2483.----P
25SAtsnoR41Gm2829.----P
25SAtsnoR41YUm1064.----P
25SAtsnoR44Am23161,2U79Am3809--PH
25SAtsnoR44Cm23271U74Cm3820SnR64Cm2235PHY
25SAtsnoR45Gm207.----P
25SAtsnoR47Gm1079.----P
25SAtsnoR47Gm1989.----P
25SAtsnoR49Um2863.----P
25SAtsnoR50Gm1717.----P
25SAtsnoR51Gm2942.----P
25SAtsnoR52Gm2885.----P
25SAtsnoR53Um24001----P
25SAtsnoR55Am184.----P
25SAtsnoR56Gm1583.----P
25SAtsnoR57Gm849.----P
25SAtsnoR58YCm674.NdCm1327SnR58Cm661PHY
25SAtsnoR59Gm18452----P
25SAtsnoR60Gm21141,4----P
25SAtsnoR61Am1248.----P
25SAtsnoR62Cm2275.----P
25SAtsnoR63Cm1840.----P
25SAtsnoR64Um2873.----P
25SAtsnoR65Gm398.----P
25SAtsnoR68Um2726.----P
25SAtsnoR68YAm26312--SnR68Am2637PY
25SAtsnoR69YCm2938.--SnR69Cm2945PY
25SAtsnoR70Um7841----P
25SAtsnoR71Gm2831.----P
25SAtsnoR72YAm883.--SnR72Am874PY
25SAtsnoR742913.Nd4470Nd2920PHY
25SAtsnoR752913.Nd4470Nd2920PHY
25SAtsnoR76214.----P
25SAtsnoR77826.Nd1523..PH
25SAtsnoR782620.----P
25SAtsnoR792248.Nd3741--PH
25SAtsnoR801130.nd1909SnR51124PHY
25SAtsnoR80999.nd1717SnR49990PHY
25SAtsnoR811013.Nd1731SnR51004PHY
25SAtsnoR82783.----P
25SAtsnoR832304.Nd3797..PH
25SAtsnoR832339.Nd3832..PH
25SAtsnoR862555.----P
25SAtsnoR872126.Nd3618..PH
25SAtsnoR8935.----P
25SAtsnoR922244.Nd3737--PH
25SAtsnoR932773.Nd4330..PH
25SAtsnoR94132.----P
25SAtsnoR952703.----P
25SAtsnoR961246.----P
25SAtsnoR972707.Nd4263..PH
25SAtsnoR981013.Nd1731SnR51004PHY
25SAtsnoR992201.Nd3694..PH
5.8SAtsnoR39BYGm791.2NdGm75--PH
5.8SAtsnoR8578.....P



Mapped sites with unknown snoRNA

SnoRNA Predicted Sites Mapped Sites Human SnoRNA Human Sites Yeast SnoRNA Yeast Sites Conservation of Sites
Nd Gm1452 2 Nd Gm2351 U24 Gm1448 PHY
Nd . Um1634 - - - - P
Nd . Um1918 - - - - P
Nd . Gm2642 U58 Gm4198 - - PH
Nd . Gm2783 U60 Gm4340 SnR48 Gm2790 PHY
Nd . Cm2847 - - - - P
Nd . Cm2856 Nd Cm4413 - - PH
Nd . Um2943 Nd Um4500 - - PH


Nd - methylation site but no snoRNA identified; "-" - no human/yeast site and no known human/yeast snoRNA.

Numbering of Arabidopsis, human and yeast rRNAs are based on Genbank Accessions: X16077 and X52320, U13369 (see Kiss-Laszlo et al. 1996) and the snoRNA database for S. cerevisiae methyl guide snoRNAs (Link). Zm - Zea mays (maize). P - plant, H - Human, Y - yeast.

References for mapped sites:
1. Barneche et al. (2001)
2. Brown et al. (2001)
3. Qu et al. (2001)
4. Barneche et al. (200)




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