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snoRNA - Results


Results

Box C/D snoRNAs with complementarity to rRNAs



Novel snoRNA
Name Site Gene Number Cluster D/D' Box Orthologues Expression Accession Add Note View Notes
SnoR1 25S Gm2781* 2 + D' ATGA; 15bp, 1mm + PE AJ300656     Add View
SnoR10 25S Um2641* 2 + D' CTGA; 14bp + N, PE, cDNA AJ010675     AJ240070     Add View
SnoR10 . . . NULL . . AF317952     AF317953     Add View
SnoR11 18S Am1662 1 + D' TTGA; 13bp, 1G:U (terminal), 1mm - cDNA Add View
SnoR12 25S Am2116* 3 + D' TTGA; 11bp, 1G:U (terminal) + N, PE, cDNA AJ240077     AJ240078     Add View
SnoR12 25S Am943* 3 + D CTGA; 11 bp (snoR12-2 and 3; 11bp, 1G:U (snoR12- + N, PE, cDNA Add View
SnoR13 18S Um613* 2 + D' ATGA; 11bp, 1G:U (terminal) + PE AF317983     AF317984     Add View
SnoR13 25S Um3289 2 + D CTGA; 11bp for 25S Um3289 + PE Add View
SnoR14 18S Um1232 2 + D' CTGA; 12bp + . Add View
SnoR15 18S Am438* 1 + D' CTGA; 13bp + . Add View
SnoR15 25S Cm1850* 1 + D CTGA; 13bp + . Add View
SnoR16 25S Um48 2 + D CTGA; 12bp, 1G:U (terminal) in both snoR16 varia + PE, cDNA AF317964     Add View
SnoR16 25S Um2445 2 + SnoR16.1 D' CAGA; 12bp. + PE, cDNA AF317964     Add View
SnoR16 25S Um36 2 + SnoR16.2 D' CTGA; 11bp, 1mm. + PE, cDNA AF317964     Add View
SnoR17 18S Am466* 1 + D' CTGA; 13bp + . Add View
SnoR18 25S Am2924 2 + D' TTGA; 12bp + PE AF318005     AF318006     Add View
SnoR18 18S Am162 2 + D CTGA; 15bp, 1 G:U (terminal) + PE AF318005     AF318006     Add View
SnoR19 18S Gm1431 2 + D' ATGA; 12bp + N, PE, cDNA AJ240066     AJ276573     Add View
SnoR19 18S Um1445* 2 + D CTGA; 12bp + N, PE, cDNA AF317998     AF317999     Add View
SnoR20 18S Um1010* 2 + SnoR20.1 D CTGA; 12bp. + N, PE, cDNA AJ276574     AF31800     Add View
SnoR20 18S ?m1011* 2 + SnoR20.2 D CTGA 11bp + N, PE, cDNA Add View
SnoR21 18S Gm1272* 1 + D' CTGA; 12bp + . AJ240069     AJ242536     Add View
SnoR22 25S Am1260* 4 + D' GTGA; 13bp + PE AF317938     AF317939     Add View
SnoR22 25S Um1275* 4 + D CTGA; 11bp + PE AF317940     AF326225     Add View
SnoR23 18S Am1754* 3 + D CTGA; 15bp + PE AF317941     AF317942     Add View
SnoR23 . . . NULL . . AF317995     Add View
SnoR24 25S Cm2826* 4 + D CTGA; 10bp Iintronic + PE AF317980     AF317981     Add View
SnoR24 . . . NULL . . AF317982     AF326224     Add View
SnoR25 18S Cm795 1 + D' TTGA; 14bp - . Add View
SnoR29 25S Gm2404* 2 + D' CAGA; 10bp. + PE, cDNA Af323024     af318011     Add View
SnoR29 . . . NULL . . Aj298135     Add View
SnoR30 18S Gm390* 1 + D' CTGA; 10bp, 1G:U terminal. + PE, cDNA AF326227     Add View
SnoR31 25S Am2901 1 + D CTGA; 16bp, 1 G:U (terminal). + PE, cDNA AF318012     Add View
SnoR32 18S Am1327 2 + D' CGTA 13bp + N, PE, cDNA AJ240080     Add View
SnoR32 18S Um1263* 2 + D CTGA; 14bp, 2G:Us (1 terminal) + N, PE, cDNA Add View
SnoR36 25S Um145 1 + D CTGA; 13bp, 1G:U (terminal) + PE, cDNA AF318010     Add View
SnoR36 25S Um1218 1 + D' CAGA; 13 bp, 2G:Us (terminal), 1 mm + PE, cDNA Add View
SnoR37 25S Cm2355* 3 + D CTGA; 11bp for 25S + PE, cDNA AF317993     AF317936     Add View
SnoR37 25S Um2411 3 + D' CAGA; 12bp, 2 G:Us (terminal) + PE, cDNA AF317937     Add View
SnoR4 5.8S 2 + D' CTGA + RAT Add View
SnoR40 25S Um2483 2 + D' CTGA;16 bp, 1 G:U or 13bp. Intronic. - PE Add View
SnoR44 25S Cm2327* 3 + D' CAGA; 11bp + cDNA AF317959     AF317960     Add View
SnoR44 25S Am2316* 3 + D CTGA; 10bp + cDNA Add View
SnoR59 18S Am975* 2 + D' CCGA (59a) and CTGA (59b); 13bp + cDNA Add View
SnoR59 25S Gm1845* 2 + D CTGA; 11bp. + cDNA Add View
SnoR64 18S Am1527 . . D' 12bp . N, cDNA Add View
SnoR64 25S Um2873 . . D 11bp, 1mm . N, cDNA Add View
SnoR65 25S Gm398 . . D 12bp . N, cDNA Add View
SnoR66 18S Cm38 . . D' 12bp . N, cDNA Add View
SnoR67 18S Um1261 . . D 12bp . N, cDNA Add View
SnoR68 25S Um2726 . . D 12bp . N, cDNA Add View
SnoR69 18S Gm1415 1 . Dí TTGA; 12bp, 1G:U, 2mm or 10bp, 1G:U, 1mm. - PE Add View
SnoR7 25S Am1372 2 + D CTGA; 12bp + . Add View
SnoR70 25S Um784* 1 . Dí TTGA; 15bp, 3G:Us, 1mm. - PE Add View
SnoR71 25S Gm2831 2 . Dí GGGA, 10bp - PE Add View
SnoR8 18S Am1575 2 + D' CTGA; 10bp - cDNA Add View
SnoR8 18S Um1261 2 + D ATGA; 11bp - cDNA Add View
SnoR9 5.8S Am47* 2 + D CTGA; 14bp - N, PE, cDNA AJ240071     AJ240072     Add View


snoRNA with human (and human/yeast) orthologues
Name Site Gene Number Cluster D/D' Box Orthologues Expression Accession Add Note View Notes
U27 18S Am27 2 + D CTGA ; 13bp. + cDNA Add View
U29 25S Am2936 1 + D' ATGA; 12bp, 1G:U, 1mm at modified base + . Add View
U30 25S Am2311* 1 . D' CTGA; 12bp - cDNA Add View
U31 25S Gm2610* 2 + D' CTTA; 11bp, 1G:U + RAT, cDNA Add View
U33 18S Gm1270 2 + D CTGA; 13bp, 2 G:Us (1 terminal) + RAT Add View
U34 25S Um1882* 3 or 4? + D' TTGA; 13bp, 1G:U (U34a), 13bp,1mm (U34c) + PE AF317961     AF317962     Add View
U35 25S Cm2949* 1 . D' CTGA; 13bp + . Add View
U36 18S Am621 1 + D CTGA; 12bp + . Add View
U36a 25S Gm2226 3 + D' CTGA; 12 bp (U36a-1 and -2); 11bp, 1 G:U (U36a- + . Add View
U36a 25S Am2210* 3 + D ATGA; 16bp + . Add View
U37 25SAm2204* 1 . D' CCGA; 15bp or 16 bp, 1G:U terminal - PE AF317957     Add View
U38 25S Am1140 3 + D' CAGA; 12 bp.(U38-1 and -3); 13bp (U38-2) + PE, cDNA AJ240076     AF317951     Add View
U43 18S Cm1641 2 + D' CTGA; 10bp . PE, cDNA AF317965     Add View
U49 25S Cm2869* 3 + D' ATGA; 14bp, 1mm (mismatch conserved in human) + PE AJ300655     Add View
U49 25S Cm1510* . . NULL . . Add View
U51 25S Am814* 2 + D CTGA; 14bp + RAT Add View
U53 25S Um2355 1 . D' CTGA; 16 bp, 1 G:U and 1mm - . Add View
U54 18S Gm597 1 + D' CTGA; 13bp - . Add View
U55 25S Gm1850* 1 + D CTGA; 13bp - . Add View
U56 18S Cm471* 1 . D' CTGT;13bp - . Add View
U61 18S Um1381 1 + D CTGA; 14bp + . Add View
U80 25S Am824 2 + D' ATGA; 10bp. + PE AJ240074     Add View
U80 25S Gm915 . . D CTGA; 17 bp, 1G:U (U80.1); 16 bp, 1 G:U (U80.2) . . Add View


snoRNA with yeast orthologues
Name Site Gene Number Cluster D/D' Box Orthologues Expression Accession Add Note View Notes
SnoR38Y 25S Gm2805 2 + SnoR38Y.2 D' CTGA; 13bp. - . AJ240067     AJ276575     Add View
SnoR39BY 25S Gm812* 2 + D' CTGA; 14bp. + N, PE, cDNA AJ240068     AJ242537     Add View
SnoR39BY 5.8S Gm79* 2 + D CTGA; 10bp + N, PE, cDNA Add View
SnoR41Y 18S Am543* 1 + D CTGA; 12bp. - PE, cDNA AF317994     Add View
SnoR41Y 25S Um1064 1 + Dí ATGA; 10bp - PE, cDNA Add View
SnoR53Y 18S Am799* 1 + D' CTGA; 10bp - cDNA Add View
SnoR58Y 25S Cm674 2 + D' CAGA; 14bp, 1G:U (terminal). - PE AF317987     AF317988     Add View
SnoR68Y 25S Am2631* 1 + D' CTTA (poor); 13bp, 1mm - . Add View
SnoR69Y 25S Cm2938 1 + D' ATGA; 12bp, 1mm (at modified base) - . Add View
SnoR72Y 25S Am883 4 + D CTGA; 14bp + . AJ010669     AJ010670     Add View
SnoR72Y . . . NULL . . AJ010671     AJ010672     Add View
SnoR77Y 18S Um580 2 + D' CTGA; 11bp + cDNA AJ010674     Add View




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